Research Compendium 

A research compendium accompanies, enhances, or is a scientific publication providing data, code, and documentation for reproducing a scientific workflow. It can be published on different platforms using the label (or tag, community, ...)
research-compendium (applied on GitHub, Zenodo, OSF) or as a fallback the term "research compendium" in the description (used on GitLab). The Zenodo community even has a curation policy for the accepted records. (Note that retrieval of the current counts may be blocked by your browser settings or privacy extensions.)

• GitHub · https://github.com/topics/research-compendium/ ..
• Zenodo · https://zenodo.org/communities/research-compendium/ ..
• OSF · https://osf.io/search/?q=tags:research-compendium ..
• GitLab · https://gitlab.com/search?search=research-compendium ..
• Figshare · https://figshare.com/search?q=:keyword: research compendium

You may also follow the publication of research compendia and the discussion around the concept on social media under the hashtag #researchcompendium.

Resources

The following publications, talks, and websites use the term "research compendium" (descending publication date):

Publications, blogs & talks

• Peer, Limor, Claudia Biniossek, Dirk Betz, Thu-Mai Christian (2022). Reproducible Research Publication Workflow: A Canonical Workflow Framework and FAIR Digital Object Approach to Quality Research Output. Data Intelligence; 4 (2): 306–319. https://doi.org/10.1162/dint_a_00133
• Arguillas, F., Christian, T.-M., Gooch, M., Honeyman, T., & Peer, L. (2022). 10 Things for Curating Reproducible and FAIR Research (Version 1.1). Research Data Alliance. https://doi.org/10.15497/RDA00074
• D'Andrea, Florencia, 2020. Mi próximo artículo científico en R - Compendios de Investigación, Reproducibilidad e Interactividad en las publicaciones académicas. R-Ladies Jujuy. https://flor14.github.io/rladies-jujuy/presentacion.html (source).
• Nüst, Daniel, and Edzer Pebesma. 2020. Practical Reproducibility in Geography and Geosciences. Annals of the American Association of Geographers. doi:10.1080/24694452.2020.1806028. PDF download.
• Nüst, Daniel, Dirk Eddelbuettel, Dom Bennett, Robrecht Cannoodt, Dav Clark, Gergely Daróczi, Mark Edmondson, Colin Fay, Ellis Hughes, Lars Kjeldgaard, Sean Lopp, Ben Marwick, Heather Nolis, Jacqueline Nolis, Hong Ooi, Karthik Ram, Noam Ross, Lori Shepherd, Péter Sólymos, Tyson Lee Swetnam, Nitesh Turaga, Charlotte Van Petegem, Jason Williams, Craig Willis and Nan Xiao. 2020. "The Rockerverse: Packages and Applications for Containerisation with R". The R Journal. doi:10.32614/RJ-2020-007
• Nüst, Daniel, and Markus Konkol. 2020. "A Vision for Reproducible Research in Geoinformatics, Geography, and Geosciences". Generation Research. doi:10.25815/dm8v-2241
• Konkol, Markus, Daniel Nüst, and Laura Goulier. 2020. "Publishing computational research - A review of infrastructures for reproducible and transparent scholarly communication". Res Integr Peer Rev 5, 10 (2020). doi:10.1186/s41073-020-00095-y
• Del Ponte, Emerson. 2019. Organize, document and share research data and codes using R, webinar at Re:produce workshop Australia: Slides; Talk recording on YouTube
• Ram, Karthik. 2019. "How To Make Your Data Analysis Notebooks More Reproducible". Slides, Resources, 🎥 Video.
• Nüst, Daniel, Carl Boettiger, and Ben Marwick. 2018. "How to read a research compendium". arXiv:1806.09525 [cs.GL].
• Stodden, Victoria, Seiler, Jennifer, and Ma, Zhaokun. 2018. "An empirical analysis of journal policy effectiveness for computational reproducibility". Proceedings of the National Academy of Sciences Mar 2018, 115 (11), 2584-2589. doi:10.1073/pnas.1708290115
• Marwick, Ben, Carl Boettiger, and Lincoln Mullen. 2018. "Packaging Data Analytical Work Reproducibly Using R (and Friends)". The American Statistician 72 (1): 80–88. doi:10.1080/00031305.2017.1375986
• Brinckman, Adam, Kyle Chard, Niall Gaffney, Mihael Hategan, Matthew B. Jones, Kacper Kowalik, Sivakumar Kulasekaran, et al. 2018. "Computing Environments for Reproducibility: Capturing the 'Whole Tale'". Future Generation Computer SystJournal policy for computational reproducibilityems. doi:10.1016/j.future.2017.12.029
• DeCicco, Laura, Noam Ross, Alice Daish, Molly Lewis, Nistara Randhawa, Carl Boettiger, Nils Gehlenborg, Jennifer Thompson, and Nicholas Tierney. 2018. "Checkers: Automated Checking of Best Practices for Research Compendia". rOpenSci Labs. https://github.com/ropenscilabs/checkers.
• Marwick, Ben. 2018. "Using R and Related Tools for Reproducible Research in Archaeology". In: Kitzes, J., Turek, D., & Deniz, F. (Eds.). The Practice of Reproducible Research: Case Studies and Lessons from the Data-Intensive Sciences. Oakland, CA: University of California Press.
• Nüst, Daniel, Markus Konkol, Edzer Pebesma, Christian Kray, Marc Schutzeichel, Holger Przibytzin, and Jörg Lorenz. 2017. "Opening the Publication Process with Executable Research Compendia". D-Lib Magazine 23 (1/2). doi:10.1045/january2017-nuest
• DataONE Reproducible Research Compendia Onboarding (draft, 2017)
• Broussard, Meredith. 2016. "Big Data in Practice.". Digital Journalism 4 (2): 266–79. doi:21670811.2015.1074863
• Stodden, Victoria, Sheila Miguez, and Jennifer Seiler. 2015. "ResearchCompendia.org: Cyberinfrastructure for Reproducibility and Collaboration in Computational Science". Computing in Science & Engineering 17 (1): 12–19. doi:10.1109/MCSE.2015.18 (http://researchcompendia.org/, https://github.com/researchcompendia
• Chirigati, Fernando, Rémi Rampin, Dennis Shasha, and Juliana Freire. 2016. "ReproZip: Computational Reproducibility with Ease". In Proceedings of the 2016 International Conference on Management of Data, 2085–8. SIGMOD '16. New York, NY, USA: ACM. doi:10.1145/2882903.2899401; https://www.reprozip.org/
• Gentleman, Robert, and Duncan Temple Lang. 2007. "Statistical Analyses and Reproducible Research". Journal of Computational and Graphical Statistics 16 (1): 1–23. doi:10.1198/106186007X178663

Workshops, tutorials & tools

• Research Compendia at The Turing Way by Heidi Seibold, Barbara Vreede, and Malvika Sharan.
• Reproducible Research and Data Management workshop organized by the Max Planck Institute for the Science of Human History had a session "Research Compendia with R". 29/01/2020 and 30/01/2020.
• Reproducibility and Transparency in Archaeological Science by Ben Marwick held at Brown University in December 2019.
• Reproducible Research in R with rrtools by Anna Krystalli, held at Northwest Universities R Day, 31st October 2018.
• Author Carpentry: Writing a Research Compendium and the Future of Scientific Reporting by Thomas Morrell and Donna Wrublewski, part of FSCI 2019.
• Research Compendium website template by Emerson Del Ponte (example).
• rrrpkg (2015).

Is something missing in the resources lists? Open an issue.

Contact

If you'd like to get in touch then post an issue on GitHub.

About

This landing page was initiated by Daniel Nüst, Ben Marwick, and Carl Boettiger.